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Serrano, A.; Moret, M.;
Fernández-Parras, I.; Bombarely, A.; Luque, F.; Navarro, F.
(2024) RNA Polymerases IV and V Are Involved in Olive Fruit Development.
Genes, 15, 1. https://doi.org/10.3390/genes15010001.
Garrido-Godino, A.I., Gupta, I., Pelechano, V.
and Navarro, F. (2024) RNA
Pol II Assembly Affects ncRNA Expression. International Journal of Molecular
Sciences 25, 507. doi:10.3390/ijms25010507.
Cuevas-Bermudez, A., Martinez-Fernandez, V.,
Garrido-Godino, A.I., Jordan-Pla, A., Penate, X., Martin-Exposito, M.,
Gutierrez, G., Govind, C.K., Chavez, S., Pelechano, V. and Navarro, F.
(2023) The association of
the RSC remodeler complex with chromatin is influenced by the prefoldin-like
Bud27 and determines nucleosome positioning and polyadenylation sites usage
in Saccharomyces cerevisiae. Biochimica et biophysica acta. Gene
regulatory mechanisms, 194995.doi: 10.1016/j.bbagrm.2023.194995.
Fernández-Fernández J, Martín-Villanueva S, Perez-Fernandez
J, de la Cruz J. (2023) The Role of Ribosomal Proteins eL15 and eL36 in the
Early Steps of Yeast 60S Ribosomal Subunit Assembly. J
Mol Biol. 2023 Oct 20;435(24):168321. doi: 10.1016/j.jmb.2023.168321. Epub ahead of print. PMID:
37865285.
A. Bombarely, J. Friel and F. Luque (2023) Olive genome structure, evolution
and domestication. In The Olive – Botany and production, eds. L. Baldoni, T.
Caruso and F. Famini. pp.: 121-130. https://doi.org/10.1079/9781789247350.0000.
Serrano, A., Rodríguez-Jurado, D., Ramírez-Tejero, J.A., Luque, F., López-Escudero, F.J.,
Belaj, A., Román, B., León, L. (2023) Response to Verticillium dahliae infection
in a genetically diverse set of olive cultivars. Scientia
Horticulturae,
316, 112008. https://doi.org/10.1016/j.scienta.2023.112008.
Gutiérrez-Santiago, F. and Navarro, F., (2023). Transcription by the Three
RNA Polymerases under the Control of the TOR Signaling Pathway in
Saccharomyces cerevisiae. Biomolecules 13, 642. doi:10.3390/biom13040642
Bullones, A.; Castro, A.J.; Lima-Cabello, E.;
Alché, J.d.D.; Luque, F.; Claros, M.G.; Fernández-Pozo, N. (2023) OliveAtlas:
A Gene Expression Atlas Tool for Olea
europaea. Plants, 12,
1274. https://doi.org/10.3390/plants12061274.
Moret,
M.; Ramírez-Tejero, J.A.; Serrano, A.; Ramírez-Yera, E.; Cueva-López, M.D.;
Belaj, A.; León, L.; Rosa, R.d.l.; Bombarely, A.; Luque, F. (2023)
Identification of Genetic Markers and Genes Putatively Involved in
Determining Olive Fruit Weight. Plants, 12, 155. https://doi.org/10.3390/plants12010155.
Garrido-Godino, A.I., Martin-Exposito, M., Gutierrez-Santiago, F., Perez-Fernandez,
J. and Navarro, F., (2022).
Rpb4/7, a
key element of RNA pol II to coordinate mRNA synthesis in the nucleus with
cytoplasmic functions in Saccharomyces cerevisiae. Biochim Biophys
Acta Gene Regul Mech 1865, 194846.
https://doi.org/10.1016/j.bbagrm.2022.194846.
J. Mercado-Blanco, A. J. Fernández-González, M. Cardoni, C. Gómez-Lama
Cabanás, F. Luque y M. Fernández-López (2022) El holobionte olivo: relación
entre microbioma y tolerancia a estreses. Phytoma-España, 343.
Garrido-Godino A.I., Cuevas-Bermúdez A., Gutiérrez-Santiago F., Mota-Trujillo
M.C.
and Navarro F (2022) The Association of Rpb4
with RNA Polymerase II Depends on CTD Ser5P Phosphatase Rtr1 and Influences
mRNA Decay in Saccharomyces cerevisiae. Int. J. Mol. Sci. 2022,
23, 2002. https://doi.org/10.3390/ijms23042002.
Gutiérrez-Santiago, F., Cintas-Galán, M., Martín-Expósito, M., del Carmen
Mota-Trujillo, M., Cobo-Huesa, C., Perez-Fernandez, J. and Navarro Gómez,
F., (2022).
A High-Copy
Suppressor Screen Reveals a Broad Role of Prefoldin-like Bud27 in the TOR
Signaling Pathway in Saccharomyces cerevisiae. Genes 13, 748.
Friel, J.; Bombarely, A.; Fornell, C.D.; Luque, F.; Fernández-Ocaña, A.M. (2021)
Comparative Analysis of Genotyping by Sequencing and Whole-Genome Sequencing
Methods in Diversity Studies of Olea europaea L. Plants, 10,
2514. https://doi.org/10.3390/plants10112514.
F. Luque (2021) Descifrando el genoma del olivo. revista: Aldaba,
49:125-131.
(I.S.S.N. 1137-9173)
A. J. Fernández-González, J. A. Ramírez-Tejero, M. P.
Nevado-Berzosa, F. Luque, M. Fernández-López, J. Mercado-Blanco (2021)
Coupling the endophytic microbiome with the host transcriptome in olive
roots. Computational and Structural Biotechnology Journal, 19:4777-4789;
https://doi.org/10.1016/j.csbj.2021.08.035.
Fernández-Parras I.,
Ramírez-Tejero J.A., Luque F. and Navarro F. (2021) Several isoforms for
each RNA polymerases common subunit are differentially expressed in the
cultivated olive tree (Olea europaea L.). Front. Mol. Biosci.,
8, 679292.doi:
10.3389/fmolb.2021.679292. Incluido en e-book (ISBN
978-2-8897-4114-4).
Calvo O, Ansari A and Navarro F
(2021) Editorial: The Lesser Known World of RNA Polymerases. Front. Mol.
Biosci. 8:811413. doi: 10.3389/fmolb.2021.811413.Incluido en e-book (ISBN
978-2-8897-4114-4)
González-Jiménez A, Campos A, Navarro F, Clemente-Blanco
A and Calvo O (2021) Regulation of Eukaryotic RNAPs Activities by
Phosphorylation.
Front. Mol. Biosci.
8:681865. doi: 10.3389/fmolb.2021.681865.Incluido
en e-book (ISBN 978-2-8897-4114-4)
J. A.
Ramírez-Tejero, J. Jiménez-Ruiz, A. Serrano, A. Belaj, L. León, R. de la
Rosa, J. Mercado-Blanco, F. Luque (2021) Verticillium wilt resistant and
susceptible olive cultivars express a very different basal set of genes in
roots. BMC Genomics, 22:229; doi:10.1186/s12864-021-07545-x.
Garrido-Godino,A.I., Gutiérrez-Santiago,
F. and
Navarro F. (2021) Biogenesis of RNA polymerases in yeast.
Frontiers in Molecular Biosciences 8:669300. doi:
10.3389/fmolb.2021.669300.Incluido
en e-book (ISBN 978-2-8897-4114-4)
Lesage, E., Perez-Fernandez, J., Queille,
S., Dez, C., Gadal, O., and Kwapisz, M. (2021) Non-Coding, RNAPII-Dependent
Transcription at the Promoters of rRNA Genes Regulates Their Chromatin State
in S. cerevisiae. Non-coding Rna. 7, 41
Garrido-Godino, A.I., Gupta, I., Gutiérrez-Santiago, F. Martínez-Padilla,
A.B., Alekseenko, A., Steinmetz L.M. , Pérez-Ortín, J.E., Pelechano, V. and
Navarro F. (2020) Rpb4 and Puf3 imprint and post-transcriptionally control
the stability of a common set of mRNAs in yeast.
RNA Biology;
doi: 10.1080/15476286.2020.1839229.
Ramírez-Tejero, J. A.; Gómez-Lama Cabanás, C.; Valverde-Corredor, A.;
Mercado-Blanco, J.; F. Luque (2020) Epigenetics regulation of Verticillium
dahliae virulence: Does DNA methylation level play a role?
International Journal of Molecular Sciences, 21, 5197;
doi:10.3390/ijms21155197.
Faize, M., Fumanal, B., Luque, F., Tejero, J. A., Zou, Z., Qiao, X., Faize,
L., Gousset-Dupont, A., Roeckel-Drevet, P., Label, P., Venisse, J-S (2020)
Genome wild analysis and molecular understanding of the aquaporin diversity
in Olive trees (Olea
europaea L.)
International
Journal of Molecular Sciences,
21, 4183; doi:10.3390/ijms21114183.
Verónica Martínez-Fernández, Abel
Cuevas-Bermúdez, Francisco Gutiérrez-Santiago, Ana I. Garrido-Godino, Olga
Rodríguez-Galán, Antonio Jordán-Pla, Sergio Lois, Juan C. Triviño, Jesús de
la Cruz, and Francisco
Navarro (2020).
Prefoldin-like Bud27 influences the transcription of ribosomal components
and ribosome biogenesis in Saccharomyces
cerevisiae. RNA
doi: 10.1261/rna.075507.120.
Ramírez-Tejero, J. A.; Jiménez-Ruiz, J.; Leyva-Pérez, M. de la O.; Barroso,
J. B.; Luque F. (2020) Gene expression pattern in olive tree organs (Olea
europaea L.). Genes, 11, 544; doi:10.3390/genes11050544.
Jiménez-Ruiz, J.; Ramírez-Tejero, J.A.; Fernández-Pozo, N.; Leyva-Pérez, M.
de la O.; Yan, H.; de la Rosa, R.; Belaj, A.; Montes, E.; Rodríguez-Ariza,
M.O.; Navarro, F.; Barroso, J.B.; Beuzón, C.R.; Valpuesta, V.; Bombarely,
A.; Luque F. (2020) Transposon Activation is a Major Driver in the Genome
Evolution of Cultivated Olive Trees (Olea europaea L.).
The Plant
Genome,
e20010. https://doi.org/10.1002/tpg2.20010.
Cuevas-Bermúdez,
A., Garrido-Godino, A. I., Gutiérrez-Santiago, F. and Navarro, F. (2020).
A Yeast Chromatin-enriched Fractions Purification Approach, yChEFs, from Saccharomyces
cerevisiae. Bio-protocol 10(1):
e3471. DOI: 10.21769/BioProtoc.3471.
Begley,
Victoria; Corzo, Daniel; Jordán-Pla, Antonio,; Cuevas-Bermúdez, Abel; de
Miguel, Maria; Pérez-Aguado, David; Machuca-Ostos, Mercedes; Navarro,
Francisco; Chávez, María; Pérez-Ortín, José; Chavez, Sebastian (2019).
The mRNA degradation factor Xrn1 regulates transcription elongation in
parallel to Ccr4.
Nucleic
Acids Research.
doi:10.1093/nar/gkz660.
Cuevas-Bermúdez
A, Garrido-Godino AI and Navarro F (2019).
A novel yeast chromatin-enriched fractions purification approach, yChEFs,
for the chromatin-associated protein analysis used for chromatin-associated
and RNA-dependent chromatin-associated proteome studies from
Saccharomyces cerevisiae. Gene Reports, 16. doi:
10.1016/j.genrep.2019.100450.
J. Jiménez-Ruiz, M. de la O Leyva-Pérez, C. Gómez-Lama Cabanás, J. B.
Barroso, F. Luque, J. Mercado-Blanco (2019) The transcriptome of
Verticillium dahliae responds differentially depending on the disease
susceptibility level of the olive (Olea europaea L.) cultivar.
Genes,
10, 251.
Braun, C. M., Hackert, P., Schmid, C. E., Bohnsack, M.
T., Bohnsack, K. E., and Perez-Fernandez, J. (2019) Pol5 is required for
recycling of small subunit biogenesis factors and for formation of the
peptide exit tunnel of the large ribosomal subunit. Nucleic Acids Res.
48, 405–420
Martinez-Fernandez, V., A. I. Garrido-Godino, Cuevas-Bermúdez A. and Navarro
F. (2018).
The Yeast Prefoldin Bud27. Advances in Experimental Medicine and Biology.
1106:109-118. doi:
10.1007/978-3-030-00737-9_8
Verónica Martínez-Fernández and Francisco Navarro (2018) Rpb5, a subunit
shared by the eukaryotic RNA polymerases cooperates with the prefoldin-like
Bud27/URI.
AIMS
Verónica Martínez-Fernández, Ana Isabel Garrido-Godino1, María Carmen
Mirón-García, Victoria Begley, Antonio Fernández-Pévida , Jesús de la Cruz,
Sebastián Chávez, and Francisco Navarro (2018).
Rpb5 modulates the RNA polymerase II transition from initiation to
elongation by influencing Spt5 association and backtracking.
Biochimica
et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
1861(1):1-13. doi: 10.1016/j.bbagrm.2017.11.002.
M. de la O
Leyva-Pérez, J. Jiménez-Ruiz, C. Gómez-Lama Cabanás, A. Valverde-Corredor,
J. B. Barroso, F. Luque, J. Mercado-Blanco (2018).
Tolerance of olive (Olea europaea L.) cv. Frantoio to Verticillium
dahliae relies on both basal and pathogen-induced differential
transcriptomic responses. New Phytologist,
217: 671–686, DOI: 10.1111/nph.14833.
J. Jiménez-Ruiz, M. de la O Leyva-Pérez, E. Schilirò, J. B. Barroso, A.
Bombarely, L. Mueller, J. Mercado-Blanco, F. Luque (2017) Transcriptomic
analysis of the Olea europaea L. roots during the Verticillium
dahliae early infection process.
The Plant
Genome,
10 (1): 1-15, DOI: 10.3835/plantgenome2016.07.0060.
Boissier, F., Schmidt, C. M., Linnemann, J.,
Fribourg, S., and Perez-Fernandez, J. (2017) Pwp2 mediates UTP-B assembly
via two structurally independent domains. Sci Rep-uk. 7, 3169
Ana I
Garrido-Godino; María Carmen García-López; José García-Martínez; Vicent
pelechano; Daniel Medina; José Enrique Pérez-Ortín; Francisco Navarro
(2016).
Rpb1 foot mutations demonstrate a major role of Rpb4 in mRNA stability
during stress situations in yeast BBA GRM 1859: 731-743. doi:
10.1016/j.bbagrm.2016.03.008).
C. Mata-Pérez, B. Sánchez-Calvo, M. N. Padilla, J. C. Begara-Morales, F.
Luque, M. Melguizo, J. Jiménez-Ruiz, J. Fierro-Risco, J. C.
Domínguez-Romero, A. Peñas-Sanjuan, R. Valderrama, F. J. Corpas, J. B.
Barroso (2016) Nitro-fatty acids in plant signaling: nitro-linolenic acid
induces the molecular chaperone network in Arabidopsis. Plant Physiology,
170: 686-701.
J. J. Gonzalez-Plaza, I. Ortiz-Martín, A. Muñoz-Mérida, C. García-López, J.
F. Sánchez-Sevilla, F. Luque, O. Trelles-Salazar, E. Rodríguez-Bejarano, R.
de la Rosa, V. Valpuesta, C. Beuzón-López (2016) Transcriptomic analysis
using olive varieties and breeding progenies identify candidate genes
involved in plant architecture. Frontiers in Plant Science, 7 (240):
1-21.
M.
Leterrier, J. B. Barroso, R. Valderrama, J. C. Begara-Morales, B.
Sánchez-Calvo, M. Chaki, F. Luque, B. Viñegla, J. M. Palma, F. J. Corpas
(2016) Peroxisomal NADP-isocitrate dehydrogenase is required for Arabidopsis
stomatal movement.
Protoplasma,253:
403-415.
Bruckmann, A., Linnemann,
J., and Perez-Fernandez, J. (2016) Purification of RNA Polymerase
I-Associated Chromatin from Yeast Cells. Methods in molecular biology
(Clifton, N.J.). 1455, 213–23
J. Jiménez-Ruiz, M. C. García-López, I. Vidoy, M. de la O Leyva-Pérez, A.
Fernández-Ocaña, J. B. Barroso, A. Barceló, C. R. Beuzón, R. de la Rosa, F.
Luque (2015) Transcriptional analysis of adult cutting and juvenile seedling
olive roots. Tree Genetics and Genomes , 11: 77-88.
Verónica Martínez-Fernández, Ana Isabel Garrido-Godino, Abel Cuevas-Bermúdez
and Francisco Navarro (2015) Cytoplasmic and Nuclear Functions for the
Prefoldin-like URI/Bud27. En New Research On Molecular Chaperones.
Nova Science Publishers, Inc.. doi: 10.1387/ijdb.140224fh.
C. Mata-Pérez, J. C. Begara-Morales, F. Luque, M. N. Padilla, J.
Jiménez-Ruiz, B. Sánchez-Calvo, J. Fierro-Risco, J. B. Barroso (2015)
Transcriptomic Analyses on the Role of Nitric Oxide in Plant Disease
Resistance. Current Issues in Molecular Biology, 19: 121-128.
J. C. Begara-Morales, B. Sánchez-Calvo, M. Chaki, C. Mata-Pérez, R.
Valderrama, J. López-Jaramillo, F. Luque, F. J. Corpas, J. B. Barroso (2015)
Differential molecular response of monodehydroascorbate reductase (MDAR) and
glutathione reductase (GR) to nitric oxide post-translational modifications
caused by nitration and S-nitrosylation.
Journal of
Experimental Botany,
en prensa (doi:10.1093/jxb/erv306).
Francisco
Hernandez-Torres, Diego Franco, Amelia E. Aránega and Francisco Navarro.
Expression patterns and immunohistochemical localization of PITX2B
transcription factor in the developing mouse heart (2015) Int. J. Dev.
Biol. doi: 10.1387/ijdb.140224fh.
C. Mata-Pérez, B. Sánchez-Calvo, J. C. Begara-Morales, F. Luque, J.
Jiménez-Ruiz, M. Padilla, J. Fierro-Risco, R. Valderrama, A. Fernández
Ocaña, F. J. Corpas, J. B. Barroso (2015) Transcriptomic profiling of
linolenic acid-responsive genes in ROS signalling from RNA-seq data in
Arabidopsis. Frontiers in Plant Science, 6: 1-14.
Leyva-Pérez M de L, Valverde-Corredor A, Valderrama R, Jiménez-Ruiz J,
Muñoz-Merida A, Trelles O, Barroso JB, Mercado-Blanco J, Luque F (2015)
Early and delayed long-term transcriptional changes and short-term transient
responses during cold acclimation in olive leaves.
DNA Res.
22(1):1-11. doi: 10.1093/dnares/dsu033.
Paula
Allepuz-Fuster, Verónica Martínez-Fernández, Ana I. Garrido-Godino, Sergio
Alonso-Aguado, Steven D. Hanes, Francisco Navarro and Olga Calvo (2014)
Rpb4/7 facilitates RNA polymerase II CTD dephosphorylation. Nuclei Acids
Research, 42(22):13674-88.
Mirón-García
MC, Garrido-Godino AI, Martínez-Fernández V, Fernández-Pevida A,
Cuevas-Bermúdez a, Chávez S, de la Cruz J and Navarro F (2014).
The yeast URI-ortologue Bud27 associates with the RSC nucleosome remodeller
and modulates transcription. Nuclei Acids Research, 42(15):
9666-9676.
M. C. García-López, I. Vidoy, J. Jiménez-Ruiz, A. Muñoz-Mérida, A.
Fernández-Ocaña, R. de la Rosa, J. B. Barroso, F. Navarro, O. Trelles, C. R.
Beuzón, A. Barceló, V. Valpuesta, F. Luque (2014) Genetic changes involved
in the juvenile-to-adult transition in the shoot apex of Olea europaea L.
occurs years before the first flowering. Tree Genetics and Genomes,
10: 585-603.
J. C. Begara-Morales, B. Sánchez-Calvo, F. Luque, M. Leterrier, Mª de la O
Leyva-Pérez, F. J. Corpas, J. B. Barroso (2014) Differential transcriptomic
analysis by RNA-seq of GSNO-responsive genes between Arabidopsis roots and
leaves. Plant and Cell Physiology, 55: 1080–1095.
Hamperl, S., Brown, C.
R., Perez-Fernandez, J., Huber, K., Wittner, M., Babl, V., Stöckl, U.,
Boeger, H., Tschochner, H., Milkereit, P., and Griesenbeck, J. (2014)
Purification of specific chromatin domains from single-copy gene loci in
Saccharomyces cerevisiae. Methods in molecular biology (Clifton, N.J.).
1094, 329–41.
Pöll, G., Li, S., Ohmayer,
U., Hierlmeier, T., Milkereit, P., and Perez-Fernandez, J. (2014) In vitro
reconstitution of yeast tUTP/UTP A and UTP B subcomplexes provides new
insights into their modular architecture. PloS one. 9, e114898.
Hamperl, S., Brown, C.
R., Garea, A. V., Perez-Fernandez, J., Bruckmann, A., Huber, K., Wittner,
M., Babl, V., Stoeckl, U., Deutzmann, R., Boeger, H., Tschochner, H.,
Milkereit, P., and Griesenbeck, J. (2014) Compositional and structural
analysis of selected chromosomal domains from Saccharomyces cerevisiae.
Nucleic Acids Res. 42, e2–e2.
Merkl, P.,
Perez-Fernandez, J., Pilsl, M., Reiter, A., Williams, L., Gerber, J., Böhm,
M., Deutzmann, R., Griesenbeck, J., Milkereit, P., and Tschochner, H. (2014)
Binding of the termination factor Nsi1 to its cognate DNA site is sufficient
to terminate RNA polymerase I transcription in vitro and to induce
termination in vivo. Molecular and cellular biology. 34, 3817–27
Garrido-Godino AI, Garcia-Lopez MC, Navarro F. (2013) Correct assembly of
the RNA polymerase II depends on the foot domain and is required for
multiple steps of transcription in Saccharomyces cerevisiae Mol Cell
Biol. 33:3611-3626
F. J. Corpas, M. Leterrier, J. Begara-Morales, R. Valderrama, M. Chaki, F.
López-Jaramillo, F. Luque, J. M. Palma, M. Padilla, B. Sánchez-Calvo, C.
Mata-Pérez, J.B. Barroso (2013) Inhibition of peroxisomal hydroxypyruvate
reductase (HPR1) by tyrosine nitration. Biochimica et Biophysica Acta -
General Subjects , 1830:4981-4989.
Mirón-García MC, Garrido-Godino AI, García-Molinero V, Hernández-Torres F,
Rodrıíguez-Navarro S, and Navarro F (2013) The Prefoldin Bud27 Mediates the
Assembly of the Eukaryotic RNA Polymerases in an Rpb5-Dependent Manner.
PLoS Genet, 9 (2):e1003297.doi:10.1371/journal.pgen.1003297.
Hamperl, S., Wittner, M.,
Babl, V., Perez-Fernandez, J., Tschochner, H., and Griesenbeck, J. (2013)
Chromatin states at ribosomal DNA loci. Biochimica et biophysica acta.
1829, 405–17.
Nonnekens, J.,
Perez-Fernandez, J., Theil, A. F., Gadal, O., Bonnart, C., and Giglia-Mari,
G. (2013) Mutations in TFIIH causing trichothiodystrophy are responsible for
defects in ribosomal RNA production and processing. Human Molecular
Genetics. 22, 2881–2893.
Németh, A.,
Perez-Fernandez, J., Merkl, P., Hamperl, S., Gerber, J., Griesenbeck, J.,
and Tschochner, H. (2013) RNA polymerase I termination: Where is the end?
Biochimica et biophysica acta. 1829, 306–17.
Hierlmeier, T., Merl, J.,
Sauert, M., Perez-Fernandez, J., Schultz, P., Bruckmann, A., Hamperl, S.,
Ohmayer, U., Rachel, R., Jacob, A., Hergert, K., Deutzmann, R., Griesenbeck,
J., Hurt, E., Milkereit, P., Baßler, J., and Tschochner, H. (2013) Rrp5p,
Noc1p and Noc2p form a protein module which is part of early large ribosomal
subunit precursors in S. cerevisiae. Nucleic Acids Res. 41,
1191–1210.
Albert, B., Colleran, C.,
Léger-Silvestre, I., Berger, A. B., Dez, C., Normand, C., Perez-Fernandez,
J., McStay, B., and Gadal, O. (2013) Structure-function analysis of Hmo1
unveils an ancestral organization of HMG-Box factors involved in ribosomal
DNA transcription from yeast to human. Nucleic acids research. 41,
10135–49.
Ohmayer, U., Gamalinda,
M., Sauert, M., Ossowski, J., Pöll, G., Linnemann, J., Hierlmeier, T.,
Perez-Fernandez, J., Kumcuoglu, B., Leger-Silvestre, I., Faubladier, M.,
Griesenbeck, J., Woolford, J., Tschochner, H., and Milkereit, P. (2013)
Studies on the assembly characteristics of large subunit ribosomal proteins
in S. cerevisae. PloS one. 8, e68412.
Regot, S., Nadal, E. de,
Rodríguez-Navarro, S., González-Novo, A., Pérez-Fernandez, J., Gadal, O.,
Seisenbacher, G., Ammerer, G., and Posas, F. (2013) The Hog1
stress-activated protein kinase targets nucleoporins to control mRNA export
upon stress. The Journal of biological chemistry. 288, 17384–98
Jakob, S., Ohmayer, U.,
Neueder, A., Hierlmeier, T., Perez-Fernandez, J., Hochmuth, E., Deutzmann,
R., Griesenbeck, J., Tschochner, H., and Milkereit, P. (2012)
Interrelationships between yeast ribosomal protein assembly events and
transient ribosome biogenesis factors interactions in early pre-ribosomes.
PloS one. 7, e32552.
Ohmayer, U.,
Perez-Fernandez, J., Hierlmeier, T., Pöll, G., Williams, L., Griesenbeck,
J., Tschochner, H., and Milkereit, P. (2012) Local tertiary structure
probing of ribonucleoprotein particles by nuclease fusion proteins. PloS
one. 7, e42449.
Albert, B.,
Perez-Fernandez, J., Léger-Silvestre, I., and Gadal, O. (2012) Regulation of
Ribosomal RNA Production by RNA Polymerase I: Does Elongation Come First?
Genetics Research International. 2012, 276948.
Reiter, A., Hamperl, S.,
Seitz, H., Merkl, P., Perez-Fernandez, J., Williams, L., Gerber, J., Németh,
A., Léger, I., Gadal, O., Milkereit, P., Griesenbeck, J., and Tschochner, H.
(2012) The Reb1-homologue Ydr026c/Nsi1 is required for efficient RNA
polymerase I termination in yeast. The EMBO journal. 31, 3480–93
García-López MC, Pelechano V, Mirón-García MC, Garrido-Godino AI, García A,
Calvo O, Werner M, Pérez-Ortín JE and Navarro F (2011) The conserved foot
domain of RNA Pol II associates with proteins involved in transcriptional
initiation and/or early elongation. Genetics, 84(4), 1235-48.
García-López MC and Navarro F. (2011) RNA polymerase II conserved protein
domains as platforms for protein-protein interactions. Transcription,
2:4, 193-197.
Lozano-Velasco E, Chinchilla A, Martínez-Fernández S, Hernández-Torres F,
Navarro F, Lyons GE, Franco D, Aránega AE.
(2011) Pitx2c modulates cardiac-specific transcription factors networks in
differentiating cardiomyocytes from murine embryonic stem cells. Cell
Tissue Organ, 194(5):349-62.
Pérez-Fernández, J.,
Martín-Marcos, P., and Dosil, M. (2011) Elucidation of the assembly events
required for the recruitment of Utp20, Imp4 and Bms1 onto nascent pre-ribosomes.
Nucleic acids research. 39, 8105–21.
Albert, B.,
Léger-Silvestre, I., Normand, C., Ostermaier, M. K., Pérez-Fernández, J.,
Panov, K. I., Zomerdijk, J. C., Schultz, P., and Gadal, O. (2011) RNA
polymerase I-specific subunits promote polymerase clustering to enhance the
rRNA gene transcription cycle. The Journal of cell biology. 192,
277–93
Fernández-Ocaña, A., García-López, MC., Jiménez-Ruiz, J., Saniger, L.,
Macías, D., Navarro, F., Oya, R., A. Belaj, de la Rosa, R., Corpas, FJ.,
Barroso, JB., Luque, F. (2010) Identification of a gene involved in the
juvenile-to-adult transition (JAT) in cultivated olive trees. Tree
Genetics and Genomics 6, 891-903.
García-López MC, Mirón-García MC, Garrido-Godino AI, Mingorance C and
Navarro F. (2010) Overexpression of Sng1 causes 6-azauracil resistance in
Saccharomyces cerevisiae.
Current
Genetics
56, 251-263.,
M. Chaki, A.
Fernández-Ocaña, R. Valderrama, A. Carreras, F. J. Esteban, F. Luque, M. V.
Gómez-Rodriguez, J. Begara-Morales, F. J. Corpas, J. B. Barroso (2009).
Involvement of reactive nitrogen and oxygen species (RNS and ROS) in
sunflower-mildew interaction. Plant and Cell Physiology, 50, 265-279.
C.
García-Moruja, P. Rueda, C. Torres, J. Alcamí, F. Luque, A. Carúz (2009).
Molecular phenotype of CXCL12β
3’UTR G801A polymorphism (rs1801157) associated to HIV-1 disease
progression. Current HIV Research, 7, 384-389.
D. Macias,
R. Oya, L. Saniger, F. Martín, F. Luque (2009).
A lentiviral vector that activates latent HIV-1 proviruses by the
overexpression of Tat and that kills the infected cells.
Human Gene
Therapy
20, 1259-1268.
M. Chaki, R.
Valderrama, A. Fernández-Ocaña, A. Carreras, F. López-Jaramillo, F. Luque,
P. Palma, J. Pedrajas, M. V. Gómez-Rodríguez, B. Sánchez-Calvo, J. Corpas,
J. B. Barroso (2009).
Protein targets of tyrosine nitration in sunflower (Helianthus annuus L)
hypocotyls. Journal of Experimental Botany 60, 4221-4234.
Hernández-Torres F, Pedrajas Cabrera José Rafael, Aránega Amelia Eva And
Navarro F (2008) Expression in bacteria of small and specific protein
domains of two transcription factor isoforms, purification and monospecific
polyclonal antibodies generation, by a two-step affinity chromatography
procedure.
Protein
Expression and Purification
60, 151-156.
Hernández-Torres F, Martínez-Fernandez S, Zuluaga S, Nebreda A, Porras A,
Aránega AE, and Francisco Navarro (2008).
A role for p38 protein kinase in embryonic cardiac differentiation.
Febs
Letters
582, 1025-2031.
A.
Fernández-Ocaña, L. Saniger, D. Macías, F. Navarro, R. Oya, A. Carreras, R.
de la Rosa, J.B. Barroso, F. Luque (2008). Búsqueda de genes implicados en
la transición juvenil vegetativa a adulta en Olea europaea L. En Proyectos
de Investigación 2005-06 Editor Eulogio Castro, pp.: 115-148. Servicio de
Publicaciones de la Universidad de Jaén.
R.
Valderrama, F.J. Corpas, A. Carreras, A. Fernández-Ocaña, M. V.
Gómez-Rodríguez, M. Chaki, F. Luque, P. Colmenero-Varea, L.A. del Río, J.R.
Pedrajas y J.B. Barroso (2008). Implicación de las especies de nitrógeno
reactivo en los procesos de defensa antioxidante en plántulas de olivo. En
Proyectos de Investigación 2005-06 Editor Eulogio Castro, pp.: 149-186.
Servicio de Publicaciones de la Universidad de Jaén.
Macías JN,
de la Rosa A, Navarro F, Franco D y Aránega AE (2008).
Tissue distribution and subcellular localization of the cardiac
sodiumchannel during mouse heart development.
Cardiovascular Research.
78, 45-52.
Cécile Zaros, Jean-François Briand, Yves Boulard, Sylvie Labarre-Mariotte,
M. Carmen Garcia-Lopez, Pierre Thuriaux & Francisco Navarro (2007).
Functional organisation of the Rpb5 subunit shared by the three yeast RNA
polymerases.
Nucleic Acid
Research,
35, 634-647.
R.
Valderrama, F. J. Corpas, A. Carreras, A. Fernández-Ocaña, M. Chaki, F.
Luque, M. V. Gómez-Rodriguez, P. Colmenero-Varea, L. A. del Rio, J. B.
Barroso (2007) Nitrosative stress in plants. FEBS Letters 581,
453-461.
Pérez-Fernández, J., Román, A.,
Rivas, J., Bustelo, X. R., and Dosil, M. (2007) The 90S preribosome is a
multimodular structure that is assembled through a hierarchical mechanism.
Molecular and cellular biology. 27, 5414–29.
Sergio
Martínez-Fernandez, Francisco Hernández-Torres, Diego Franco, Gary E. Lyons,
Francisco Navarro and Amelia E. Aránega (2006).
Pitx2c overexpression promotes cell proliferation and arrests
differentiation in myoblasts. Developmental Dynamics 235, 2930-2939.
Julie Soutourina, Véronique Bordas-Le Floch, Gabrielle Gendrel, Amando
Flores, Cécile Ducrot, Hélène Dumay-Odelot, Pascal Soularue, Francisco
Navarro, Bradley R. Cairns, Olivier Lefebvre And Michel Werner (2006). Rsc4
connects the chromatin remodeler RSC to RNA polymerases. Mol Cell Biol
26, 4920-4933.
F. J. Corpas,
A. Fernández-Ocaña, A. Carreras, R. Valderrama, F. Luque, María Rodríguez-Serrano,
M. Chaki, J. R. Pedrajas, L. M. Sandalio, L. A. del Río, J. B. Barroso
(2006).
The expression of superoxide dismutase isozymes is cell-type dependent in
olive (Olea europaea L.) leaves.
Plant & Cell
Physiology
47, 984-994.
López-Flores,
J. Peragón, R. Valderrama, F. J. Esteban, F. Luque, M. A. Peinado, F. Aranda,
J. A. Lupiáñez, J. B. Barroso (2006).
Down-regulation in the expression of the rat-liver serine dehydratase during
chronic metabolic acidosis. The American Journal of Physiology -
Regulatory, Integrative and Comparative Physiology 291, R1295-R1302.
Saniger, M.L., Oya, R., Macias, D., Dominguez, J.N., Aranega, A., and Luque,
F. (2006) c-Jun kinase mediates expression of VEGF induced at
transcriptional level by Rac1 and Cdc42Hs but not by RhoA. J Cell Biochem
98, 650-660.
Jorge N.
Domínguez, Francisco Navarro, Diego Franco, Robert P. Thompson, Amelia E.
Aránega (2005).
Temporal and spatial expression pattern of a1 sodium channel subunit during
heart development.
Cardiovascular Research
65, 842-850.
Garcia-Moruja,
C., Alonso-Lobo, J.M., Rueda, P., Torres, C., Gonzalez, N., Bermejo, M.,
Luque, F., Arenzana-Seisdedos, F., Alcami, J., and Caruz, A. (2005)
Functional Characterization of SDF-1 Proximal Promoter. J Mol Biol,
348,43-62.
Lopez-Flores, I., Barroso, J.B., Valderrama, R., Esteban, F.J.,
Martinez-Lara, E., Luque, F., Peinado, M.A., Ogawa, H., Lupianez, J.A., and
Peragon, J. (2005) Serine dehydratase expression decreases in rat livers
injured by chronic thioacetamide ingestion. Mol Cell Biochem,
268,33-43.
Luque, F., Oya, R., Macias, D., and Saniger, L. (2005) Gene therapy for
HIV-1 infection: are lethal genes a valuable tool? Cell Mol Biol
(Noisy-le-grand), 51,93-101.
Luque, F and Oya R. (2005) AIDS gene therapy: A vector able to selectively
destroy latently HIV-1 infected cells. En Modern Biopharmaceuticals -
Design, Development and Optimization. Editor Jörg Knäblein. In Modern
Biopharmaceuticals - Design, Development and Optimization. Vol. 2 pp.:
549-568. Wiley VCH.
Pérez-Fernández, J., Remacha, M.,
and Ballesta, J. P. (2005) The Acidic Protein Binding Site Is Partially
Hidden in the Free Saccharomyces cerevisiae Ribosomal Stalk Protein P0 †.
Biochemistry. 44, 5532–5540.
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